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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180611682_180612387_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180611682 - 180612387
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGCGT
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTGCTTACCA
Flanking Amino Acid:
HFYSFTNEHHRETYIEQQQG
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.7
46.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.5
0.82
0.7
85.9
28.3
Minor 5ss
33
-1.9
3.4
48.4
47.2
Minor BPS
60.9
0.34
2.1
75.93
41.5

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719