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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180612579_180612693_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180612579 - 180612693
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TCTTGCATAAAT
Flanking Amino Acid:
ALEEGITAYTCEEYIKSLIA
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
78.5
0.64
0.9
73.4
37.1
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
53.7
0.2
2.2
78.17
43.8

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719