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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180615321_180619068_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180615321 - 180619068
Intron Length:
3748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAAAACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTCTTTTAAAA
Flanking Amino Acid:
VHGDAEENKEIIIQGLKHLN
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
100
1.24
0.5
100
0
Major PPT
62.6
0.28
1.1
52.9
44.9
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719