About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180619234_180620143_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
180619234 - 180620143
Intron Length:
910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTTTG
5'SS Class:
weak_major
3'SS Sequence:
TATTTTGTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GGTTTTTCAACC
Flanking Amino Acid:
IETEEEKENILKTSDNKSML
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
66.2
39.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.9
0.6
1
70.6
44.1
Minor 5ss
58.7
0.29
2.3
72.3
38.9
Minor BPS
60.6
0.31
1.5
67.81
37.6

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719