Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180620258_180620354_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

180620258 - 180620354

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGTAA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGCTAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TGTCTGCTAATA

Flanking Amino Acid:

GMLSKSQIKEARRHLFTPAD

Intron Amino Acid Position:

369

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

28.7

Major BPS

84.4

0.85

34.5

Major PPT

67.4

0.39

62.5

38.6

Minor 5ss

-1.6

3.3

46.2

49.1

Minor BPS

45.5

-0.3

2.2

61.85

38.4

Associated Gene:

Gene:

DIS3

Ensembl Gene ID:

ENSAPLG00000012686

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013211

180609888 - 180639606

29719