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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180620493_180622492_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180620493 - 180622492
Intron Length:
2000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATACACACAC
Flanking Amino Acid:
GWPRNSRYPNGHFVKNLGTA
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
38.5
-0.8
2
49.88
39.4

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719