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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180629675_180629765_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180629675 - 180629765
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATGTA
5'SS Class:
major
3'SS Sequence:
CCCTCTCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGGATTTTAACA
Flanking Amino Acid:
NLCSLRSNVDRLAFSCIWEM
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
76.5
32.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.8
0.51
0.7
67.6
25.9
Minor 5ss
41.7
-0.9
3.2
57.6
47.1
Minor BPS
64.9
0.46
1.3
68.16
38.3

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719