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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180629851_180630463_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180629851 - 180630463
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TAACCTCTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
RFTKSIINSKASLTYAEAQM
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.1
73.5
37.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
64
0.32
1.1
60.8
40
Minor 5ss
30.9
-2.2
2.7
35.9
40.8
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719