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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180631143_180632035_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
180631143 - 180632035
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATGCCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTATGTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GCTTTTCTAACA
Flanking Amino Acid:
DPIDLQTKELKETNSMVEEF
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
68.1
42.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.2
0.59
1.1
72.3
42.5
Minor 5ss
55.7
0.19
2.7
73.9
36.3
Minor BPS
58.5
0.26
1.7
68.01
38.6

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719