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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180632193_180633362_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180632193 - 180633362
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTGCTTGTAATA
Flanking Amino Acid:
DILVKAAKSKDLEIKTDSAK
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.4
0.77
0.7
79.2
26.5
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
49.2
-0
2
63.44
37.8

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719