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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180634791_180635194_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180634791 - 180635194
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTAATGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AAAACTTTAATG
Flanking Amino Acid:
PTPRLDYNNEVPSLTVEDTM
Intron Amino Acid Position:
892

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
81.6
33.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
72.2
0.5
1
70.3
40
Minor 5ss
46.5
-0.4
3.1
66.5
39
Minor BPS
59.6
0.16
1.4
56.75
38.7

Associated Gene:

Gene:
DIS3
Ensembl Gene ID:
ENSAPLG00000012686
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013211
180609888 - 180639606
29719