Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180643307_180644087_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

180643307 - 180644087

Intron Length:

781

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTATGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTTGAA

U12 Branch Point Sequence:

TTTCTCTTTATA

Flanking Amino Acid:

ENQIQGFHRSATISSPRMLD

Intron Amino Acid Position:

579

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.77

0.9

81.4

31.6

Major BPS

54.3

0.11

1.3

49.1

46.3

Major PPT

88.3

0.86

0.6

84.3

23.8

Minor 5ss

43.6

-0.7

2.6

56.3

42.5

Minor BPS

64.6

0.45

1.6

76.23

34.4

Associated Gene:

Gene:

BORA

Ensembl Gene ID:

ENSAPLG00000012807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013360

180642939 - 180658441

15503

ENSAPLT00000010538

180642939 - 180658441

15503