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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180644263_180645790_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180644263 - 180645790
Intron Length:
1528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTATAAACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCCTTATAA
Flanking Amino Acid:
QNKSQLPKTKECALSHKDSQ
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
60.9
0.25
1
52.7
40.8
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
73.6
0.74
1.6
84.92
34.6

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013360
180642939 - 180658441
15503
ENSAPLT00000010538
180642939 - 180658441
15503