About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180645923_180646322_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180645923 - 180646322
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCCTCTTGATT
Flanking Amino Acid:
ANPCDSSSIQVDSGYNTQTC
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
79
0.65
0.9
72.3
36.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
68.5
0.66
1.2
79.78
36.5

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010538
180642939 - 180658441
15503
ENSAPLT00000013360
180642939 - 180658441
15503