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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180646922_180647882_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180646922 - 180647882
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATGGAATAACT
Flanking Amino Acid:
AFHIRHTPLSDQRKLTFCSP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
72.2
0.5
1
67.3
38
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
44.2
-0.3
2.2
65.96
44

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013360
180642939 - 180658441
15503
ENSAPLT00000010538
180642939 - 180658441
15503