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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180649501_180650804_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
180649501 - 180650804
Intron Length:
1304

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
CCCACGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGGAAA
Flanking Amino Acid:
PVDFNLEKILGEYFRTDEFA
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.5
35
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
66.4
0.37
0.9
56.8
38.6
Minor 5ss
70.5
0.69
2.2
81.8
38.5
Minor BPS
49.7
-0
1.8
65.48
40.4

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013360
180642939 - 180658441
15503