About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180649501_180651636_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180649501 - 180651636
Intron Length:
2136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
CCCACGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGGAAA
Flanking Amino Acid:
QLPLQPGKSNGEYFRTDEFA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
66.4
0.37
0.9
56.8
38.6
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
49.7
-0
1.8
65.48
40.4

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010538
180642939 - 180658441
15503