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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180650862_180651636_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180650862 - 180651636
Intron Length:
775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAA
5'SS Class:
major
3'SS Sequence:
TTATTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
ATTTTGTTGATT
Flanking Amino Acid:
QLPLQPGKSNAACQTVLSLP
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
72.7
33.2
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
83.5
0.75
0.8
77.7
35.2
Minor 5ss
26.3
-2.7
2.9
27.3
37.8
Minor BPS
58.7
0.35
2
80.3
35.9

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013360
180642939 - 180658441
15503