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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180653840_180656965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
180653840 - 180656965
Intron Length:
3126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGTAACTTAATT
Flanking Amino Acid:
RRQAMYLSHARIDKETEDRR
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1.1
72.3
39.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
82
0.72
0.7
81.5
30.5
Minor 5ss
40.1
-1.1
2.9
52.9
44.3
Minor BPS
69.4
0.69
1.5
82.97
37.7

Associated Gene:

Gene:
BORA
Ensembl Gene ID:
ENSAPLG00000012807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010538
180642939 - 180658441
15503
ENSAPLT00000013360
180642939 - 180658441
15503