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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180659592_180661516_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
180659592 - 180661516
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
SLNAVRETMDVLFEISRILN
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
55.1
43.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
92.1
0.95
0.6
87.3
23.1
Minor 5ss
23.7
-3
3.3
29.1
43.5
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
MZT1
Ensembl Gene ID:
ENSAPLG00000021793
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032442
180659510 - 180664037
4528