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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180661663_180664013_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
180661663 - 180664013
Intron Length:
2351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTGTAATAAAT
Flanking Amino Acid:
ELRKATEALKAAENMTG*
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.2
43.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
44
-0.7
2.8
58.7
45.8
Minor BPS
45.5
-0.2
2
66.81
43.6

Associated Gene:

Gene:
MZT1
Ensembl Gene ID:
ENSAPLG00000021793
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032442
180659510 - 180664037
4528