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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180763699_180791602_F

Intron Information:

Intron Rank:
144387
Intron Class:
major
Intron Phase:
Intron Coordinates:
180763699 - 180791602
Intron Length:
27904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGTTATA
5'SS Class:
major
3'SS Sequence:
TTTTTGTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAG
U12 Branch Point Sequence:
AGTACTTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
79.9
35
Major BPS
60.8
0.27
1.6
60.1
46.3
Major PPT
86.1
0.81
0.7
84.9
29.9
Minor 5ss
38
-1.4
3.1
51
45.5
Minor BPS
49.2
0.02
1.8
68.62
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027826
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032698
180763590 - 180795370
31781