Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_180794686_180795205_F

Intron Information:

Intron Rank:

144389

Intron Class:

major

Intron Phase:

Intron Coordinates:

180794686 - 180795205

Intron Length:

520

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CTCTTATTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

TTGGCATTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

0.56

79.1

32.1

Minor 5ss

39.7

-1.2

3.1

51.1

45.2

Minor BPS

62.7

0.39

1.7

72.22

40.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027826

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032698

180763590 - 180795370

31781