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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18095355_18110225_F

Intron Information:

Intron Rank:
145620
Intron Class:
major
Intron Phase:
Intron Coordinates:
18095355 - 18110225
Intron Length:
14871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AACATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.9
87
24.1
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
63.8
0.51
1.3
71.65
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028482
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038556
18095265 - 18110832
15568