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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_181057244_181060821_R

Intron Information:

Intron Rank:
154239
Intron Class:
major
Intron Phase:
Intron Coordinates:
181057244 - 181060821
Intron Length:
3578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GTCTGCATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.2
0.66
0.8
72.8
37.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
56.6
0.29
2.1
77.67
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030442
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045361
181056541 - 181062834
6294