Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_181060984_181062777_R

Intron Information:

Intron Rank:

154240

Intron Class:

major

Intron Phase:

Intron Coordinates:

181060984 - 181062777

Intron Length:

1794

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTGTTTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TTTTCAAAAACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

77.2

32.8

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

75.3

0.57

0.9

69.2

37.1

Minor 5ss

32.6

-2

3.4

44.1

43.8

Minor BPS

56.6

0.29

2.2

86.43

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030442

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045361

181056541 - 181062834

6294