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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_181327946_181330101_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
181327946 - 181330101
Intron Length:
2156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAGGTCAC
5'SS Class:
weak_major
3'SS Sequence:
TTGTGTCTAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TTGTGTCTAGCA
Flanking Amino Acid:
ARTESSSDRIPVHQNGLSMN
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.7
0.21
1.4
54.5
44.8
Major BPS
68
0.45
1
57.8
39
Major PPT
74.9
0.56
1
70.7
39.8
Minor 5ss
35
-1.7
3.2
48.1
41.3
Minor BPS
45.8
-0.3
2.2
63.57
43.1

Associated Gene:

Gene:
DACH1
Ensembl Gene ID:
ENSAPLG00000012935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035078
181071163 - 181506302
435140
ENSAPLT00000022006
181071163 - 181423910
352748
ENSAPLT00000021995
181071163 - 181432814
361652