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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_181396665_181397151_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
181396665 - 181397151
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTATGCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCAGTCTTACCT
Flanking Amino Acid:
ASTDSLRVLNDSLTPEIEAD
Intron Amino Acid Position:
691

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.7
0.56
0.9
65.9
40.8
Minor 5ss
34
-1.8
2.9
40.9
39.4
Minor BPS
56.8
0.29
1.8
71.66
45.5

Associated Gene:

Gene:
DACH1
Ensembl Gene ID:
ENSAPLG00000012935
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021995
181071163 - 181432814
361652
ENSAPLT00000013480
181071163 - 181432814
361652
ENSAPLT00000013476
181071163 - 181401438
330276
ENSAPLT00000035078
181071163 - 181506302
435140
ENSAPLT00000022006
181071163 - 181423910
352748