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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_181726013_181728795_R

Intron Information:

Intron Rank:
147173
Intron Class:
major
Intron Phase:
Intron Coordinates:
181726013 - 181728795
Intron Length:
2783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTCACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TATGTTTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
74
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.5
0.87
0.7
86
27.2
Minor 5ss
31.9
-2.1
3.6
45
45.5
Minor BPS
56
0.27
1.8
75.92
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026494
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024978
181717627 - 181728804
11178