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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182066745_182080153_R

Intron Information:

Intron Rank:
131490
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
182066745 - 182080153
Intron Length:
13409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCACAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
CTTTCCACAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
36.8
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
68.7
0.42
1
64.5
35.7
Minor 5ss
60.1
0.34
2.5
73
44
Minor BPS
49.3
-0
2.1
67.67
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017956
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045826
182066111 - 182080827
14717