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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18209549_18209659_F

Intron Information:

Intron Rank:
137939
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
18209549 - 18209659
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTGTC
5'SS Class:
major
3'SS Sequence:
TGCCCCAAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGCCCCAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
65.3
39.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
57.6
0.17
1
51.8
35.8
Minor 5ss
45.3
-0.5
3.1
61.4
43.6
Minor BPS
48.7
-0.1
2
62.7
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024246
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019453
18209438 - 18224473
15036