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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182185711_182258802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
182185711 - 182258802
Intron Length:
73092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATCTTATCAACA
Flanking Amino Acid:
SRATGDGGGRRLSAASHPLS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
79
0.72
1
80.3
31.7
Major PPT
80.2
0.68
1
76.9
42.1
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
53.5
0.11
1.8
66.93
39.3

Associated Gene:

Gene:
KLHL1
Ensembl Gene ID:
ENSAPLG00000002429
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002455
182185226 - 182414519
229294