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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182348027_182368656_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
182348027 - 182368656
Intron Length:
20630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAG
5'SS Class:
major
3'SS Sequence:
TTTGTCTTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTCTTATCA
Flanking Amino Acid:
YAVGGMDNNKGATTIEKYDL
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
66.2
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.9
82.2
34.2
Minor 5ss
39
-1.2
2.8
48.6
47.2
Minor BPS
66.6
0.52
1.7
78.51
38.5

Associated Gene:

Gene:
KLHL1
Ensembl Gene ID:
ENSAPLG00000002429
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002455
182185226 - 182414519
229294