About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182408054_182412526_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
182408054 - 182412526
Intron Length:
4473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCACT
5'SS Class:
weak_major
3'SS Sequence:
TCTCTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTCTCTTTCATT
Flanking Amino Acid:
HCSRLLDYVERYDPKTDTWT
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
68
42.9
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
77.3
0.61
0.8
78.3
28.9
Minor 5ss
62.8
0.43
2
76.3
38.9
Minor BPS
66.9
0.61
1.7
82.98
39.3

Associated Gene:

Gene:
KLHL1
Ensembl Gene ID:
ENSAPLG00000002429
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002455
182185226 - 182414519
229294