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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18241020_18245734_F

Intron Information:

Intron Rank:
130150
Intron Class:
major
Intron Phase:
Intron Coordinates:
18241020 - 18245734
Intron Length:
4715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTGTCATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1
64.3
37.3
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
100
1.12
0.4
100
0
Minor 5ss
30.3
-2.3
2.9
37.7
40.9
Minor BPS
72.7
0.69
1.5
79.55
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020025
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041764
18240875 - 18246955
6081