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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182412699_182414459_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182412699 - 182414459
Intron Length:
1761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
YDPQTNEWMQMASLNIGRAG
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.2
0.88
0.7
85.2
29.3
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
KLHL1
Ensembl Gene ID:
ENSAPLG00000002429
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002455
182185226 - 182414519
229294