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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182454973_182514040_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
182454973 - 182514040
Intron Length:
59068

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATGATTTCATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
44.6
-0.3
1.7
58.39
39.5

Associated Gene:

Gene:
ENOX1
Ensembl Gene ID:
ENSAPLG00000005204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023395
182454925 - 182647908
192984
ENSAPLT00000005382
182454925 - 182647908
192984