About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18247151_18249492_R

Intron Information:

Intron Rank:
131206
Intron Class:
major
Intron Phase:
Intron Coordinates:
18247151 - 18249492
Intron Length:
2342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
CATTGGCCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
CTGTGCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
63.4
0.3
1
59.7
41.4
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
44.1
-0.3
2.3
63.28
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019757
18247107 - 18257591
10485