About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_18248352_18249492_R

Intron Information:

Intron Rank:
131209
Intron Class:
major
Intron Phase:
Intron Coordinates:
18248352 - 18249492
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TATTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.7
0.83
0.7
81
30.7
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
62.4
0.47
1.9
82.13
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017805
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031058
18247079 - 18249687
2609