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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182624291_182642226_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182624291 - 182642226
Intron Length:
17936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTAAACTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTTAAAC
Flanking Amino Acid:
QAMLKVLQEQEINVLTVALV
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.8
0.54
0.9
66.7
39.3
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
70.5
0.62
1.3
75.89
33.9

Associated Gene:

Gene:
ENOX1
Ensembl Gene ID:
ENSAPLG00000005204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023395
182454925 - 182647908
192984