About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182721902_182731812_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
182721902 - 182731812
Intron Length:
9911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
ASAYHQQQELHVSSYVLITP
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.1
39.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.7
0.71
0.8
74.5
35
Minor 5ss
37.3
-1.4
2.7
48
41.7
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
EPSTI1
Ensembl Gene ID:
ENSAPLG00000005382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040746
182721603 - 182763240
41638
ENSAPLT00000022403
182721603 - 182769124
47522
ENSAPLT00000005561
182721603 - 182763633
42031