About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182744141_182754955_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
182744141 - 182754955

Intron Length:
10815

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTA|GTGAGTAAG

5'SS Class:
major

3'SS Sequence:
GATTTCTTTGTAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTGGAT

U12 Branch Point Sequence:
TCTATTTGGATT

Flanking Amino Acid:
RREMFLEDQYYKTNELLNRL

Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74
0.57
1
69.5
36.5

Major BPS
71.4
0.53
1.4
71.4
45.1

Major PPT
79.3
0.66
0.8
73.9
36.4

Minor 5ss
31.5
-2.1
2.7
35
35.9

Minor BPS
49.6
0.05
1.4
67.17
38.3

Associated Gene:

Gene:
EPSTI1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

182721603 - 182769124
47522

182721603 - 182763633
42031

182721603 - 182763240
41638