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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182755050_182761840_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182755050 - 182761840
Intron Length:
6791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATCATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TAGTTTTTCACT
Flanking Amino Acid:
ANRGPESTARAQLKESKQKN
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
74.1
38.3
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
78.1
0.63
0.9
70
40.2
Minor 5ss
38.3
-1.3
2.8
40.3
45.6
Minor BPS
60
0.39
1.7
76.03
41.2

Associated Gene:

Gene:
EPSTI1
Ensembl Gene ID:
ENSAPLG00000005382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005561
182721603 - 182763633
42031
ENSAPLT00000040746
182721603 - 182763240
41638
ENSAPLT00000022403
182721603 - 182769124
47522