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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182761915_182763092_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
182761915 - 182763092
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCATTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTTAA
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
RTRALQNEQRRKSELVGTCV
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
58.3
0.21
1.1
49.4
37.6
Major PPT
84.7
0.78
0.7
86.7
25.9
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
EPSTI1
Ensembl Gene ID:
ENSAPLG00000005382
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040746
182721603 - 182763240
41638