About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182830590_182832383_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
182830590 - 182832383
Intron Length:
1794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TAATTCCTAATC
Flanking Amino Acid:
FGALILSISEGSSAKVICKN
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
78
0.63
0.8
69
36.8
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
60.5
0.31
1.6
68.99
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005407
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005577
182830532 - 182835667
5136