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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182834134_182835162_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182834134 - 182835162
Intron Length:
1029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTTTTGTATT
Flanking Amino Acid:
QLWTGGTYQKGSFLKWSDGS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
89.6
0.89
0.7
85
29.8
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
49.7
0.06
1.7
71.5
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005407
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005577
182830532 - 182835667
5136