Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182835299_182835578_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

182835299 - 182835578

Intron Length:

280

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TTTGTTATCACT

Flanking Amino Acid:

IKFCLSLSIGGQGEWDGANC

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.6

0.98

0.8

28.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

0.85

0.8

80.2

37.3

Minor 5ss

31.6

-2.1

3.1

46.4

Minor BPS

48.5

-0

2.1

75.66

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005407

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005577

182830532 - 182835667

5136