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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182898785_182903232_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
182898785 - 182903232
Intron Length:
4448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AAGTAATTATTT
Flanking Amino Acid:
LIIDDKNIPSGTRKVNLTSW
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79
0.65
0.7
76.1
26
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
45.9
-0.2
1.9
61.97
41.8

Associated Gene:

Gene:
TNFSF11
Ensembl Gene ID:
ENSAPLG00000005413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005591
182898363 - 182915747
17385