About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182903332_182903441_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
182903332 - 182903441
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
LGRETPRPEKAAMEALGMDL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
87.6
0.85
0.7
85.5
27.9
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
TNFSF11
Ensembl Gene ID:
ENSAPLG00000005413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005591
182898363 - 182915747
17385