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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_182903488_182909481_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
182903488 - 182909481
Intron Length:
5994

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
KQALQRAVQKEVQRILGRET
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
100
1.24
0.5
100
0
Major PPT
87.3
0.84
0.7
86.5
26.1
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
TNFSF11
Ensembl Gene ID:
ENSAPLG00000005413
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005591
182898363 - 182915747
17385